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The MinoTar tool can be used to find putative microRNA targets in ORFs (fly or human genes). It was developed as a collaboration between the Perrimon group and the Berger lab at MIT.
Go to MinoTar.
Targets for microRNAs in ORFs? Yes, that's right. Read about it here: Schnall-Levin M, Zhao Y, Perrimon N, Berger B. Conserved microRNA targeting in
Drosophila is as widespread in coding regions as in 3'UTRs. Proc Natl Acad Sci U
S A. 2010 Sep 7;107(36):15751-6. PubMed PMID: 20729470; PubMed
Central PMCID: PMC2936641.
miRNA target prediction tools by others (and not limited to CDSs) include:
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